3D/2D modelling suite for integral water solutions

Delft3D

Hydro-Morphodynamics

User Manual



Delft3D-FLOW
Simulation of multi-dimensional hydrodynamic flows
and transport phenomena, including sediments

User Manual

Hydro-Morphodynamics

Version: 3.15.34158
28 May 2014


Delft3D-FLOW, User Manual

Published and printed by:
Deltares
Boussinesqweg 1
2629 HV Delft
P.O. Box 177
2600 MH Delft
The Netherlands

For sales contact:
telephone: +31 88 335 81 88
fax:
+31 88 335 81 11
e-mail:

www:


telephone:
fax:
e-mail:
www:

+31 88 335 82 73
+31 88 335 85 82



For support contact:
telephone: +31 88 335 81 00
fax:
+31 88 335 81 11
e-mail:

www:


Copyright © 2014 Deltares

All rights reserved. No part of this document may be reproduced in any form by print, photo
print, photo copy, microfilm or any other means, without written permission from the publisher:
Deltares.


Contents

Contents
1 A guide to this manual
1.1 Introduction . . . . . . . . . . . . . . . .
1.2 Manual version and revisions . . . . . . .
1.3 Typographical conventions . . . . . . . .
1.4 Changes with respect to previous versions

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2 Introduction to Delft3D-FLOW
2.1 Areas of application . . . . . . . . . . .
2.2 Standard features . . . . . . . . . . . .
2.3 Special features . . . . . . . . . . . . .
2.4 Coupling to other modules . . . . . . .

2.5 Utilities . . . . . . . . . . . . . . . . .
2.6 Installation and computer configuration

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3 Getting started
3.1 Overview of Delft3D . . . . . .
3.2 Starting Delft3D . . . . . . . .
3.3 Getting into Delft3D-FLOW . .
3.4 Exploring some menu options
3.5 Exiting the FLOW-GUI . . . .

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4 Graphical User Interface
4.1 Introduction . . . . . . . . . . . . . . . . . . . .
4.2 MDF-file and attribute files . . . . . . . . . . . .
4.3 Filenames and conventions . . . . . . . . . . . .
4.4 Working with the FLOW-GUI . . . . . . . . . . .
4.4.1 Starting the FLOW-GUI . . . . . . . . .
4.4.2 Visualisation Area window . . . . . . . .
4.5 Input parameters of MDF-file . . . . . . . . . . .
4.5.1 Description . . . . . . . . . . . . . . . .
4.5.2 Domain . . . . . . . . . . . . . . . . . .
4.5.2.1 Grid parameters . . . . . . . .
4.5.2.2 Bathymetry . . . . . . . . . .
4.5.2.3 Dry points . . . . . . . . . . .
4.5.2.4 Thin dams . . . . . . . . . . .
4.5.3 Time frame . . . . . . . . . . . . . . . .

4.5.4 Processes . . . . . . . . . . . . . . . .
4.5.5 Initial conditions . . . . . . . . . . . . .
4.5.6 Boundaries . . . . . . . . . . . . . . . .
4.5.6.1 Flow boundary conditions . . .
4.5.6.2 Transport boundary conditions
4.5.7 Physical parameters . . . . . . . . . . .
4.5.7.1 Constants . . . . . . . . . . .
4.5.7.2 Viscosity . . . . . . . . . . . .
4.5.7.3 Heat flux model . . . . . . . .
4.5.7.4 Sediment . . . . . . . . . . .
4.5.7.5 Morphology . . . . . . . . . .
4.5.7.6 Wind . . . . . . . . . . . . . .
4.5.7.7 Tidal forces . . . . . . . . . .

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iii


Delft3D-FLOW, User Manual
4.5.8
4.5.9

4.6
4.7

Numerical parameters . . . . . .
Operations . . . . . . . . . . . .
4.5.9.1 Discharge . . . . . . .
4.5.9.2 Dredging and dumping
4.5.10 Monitoring . . . . . . . . . . . .

4.5.10.1 Observations . . . . .
4.5.10.2 Drogues . . . . . . . .
4.5.10.3 Cross-sections . . . .
4.5.11 Additional parameters . . . . . .
4.5.12 Output . . . . . . . . . . . . . .
4.5.12.1 Storage . . . . . . . .
4.5.12.2 Print . . . . . . . . . .
4.5.12.3 Details . . . . . . . . .
Save the MDF and attribute files and exit
Importing, removing and exporting of data

5 Tutorial
5.1 Introduction – MDF-file and attribute files
5.2 Filenames and conventions . . . . . . . .
5.3 FLOW Graphical User Interface . . . . .
5.3.1 Introduction . . . . . . . . . . . .
5.3.2 Saving the input data . . . . . . .
5.4 Description . . . . . . . . . . . . . . . .
5.5 Domain . . . . . . . . . . . . . . . . . .
5.5.1 Grid parameters . . . . . . . . .
5.5.2 Bathymetry . . . . . . . . . . . .
5.5.3 Dry points . . . . . . . . . . . .
5.5.4 Thin dams . . . . . . . . . . . .
5.6 Time frame . . . . . . . . . . . . . . . .
5.7 Processes . . . . . . . . . . . . . . . . .
5.8 Initial conditions . . . . . . . . . . . . . .
5.9 Boundaries . . . . . . . . . . . . . . . .
5.10 Physical parameters . . . . . . . . . . .
5.10.1 Constants . . . . . . . . . . . . .
5.10.2 Roughness . . . . . . . . . . . .

5.10.3 Viscosity . . . . . . . . . . . . .
5.10.4 Wind . . . . . . . . . . . . . . .
5.11 Numerical parameters . . . . . . . . . .
5.12 Operations . . . . . . . . . . . . . . . .
5.13 Monitoring . . . . . . . . . . . . . . . . .
5.13.1 Observation points . . . . . . . .
5.13.2 Drogues . . . . . . . . . . . . .
5.13.3 Cross-sections . . . . . . . . . .
5.14 Additional parameters . . . . . . . . . . .
5.15 Output . . . . . . . . . . . . . . . . . . .
5.16 Save MDF-file . . . . . . . . . . . . . . .
5.17 Additional exercises . . . . . . . . . . . .
5.18 Execute the scenario . . . . . . . . . . .
5.19 Inspect the results . . . . . . . . . . . . .
6 Execute a scenario
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Contents
6.1

6.2
6.3

6.4
6.5

Running a scenario . . . . . . . . . . . . . . . .
6.1.1 Parallel calculations . . . . . . . . . . .
6.1.1.1 DomainDecomposition . . . .
6.1.1.2 MPI-based parallel . . . . . .
6.1.1.3 Fluid mud . . . . . . . . . . .
6.1.1.4 Mormerge . . . . . . . . . . .
6.1.2 Running a scenario using Delft3D-MENU
6.1.3 Running a scenario using a batch script .
Run time . . . . . . . . . . . . . . . . . . . . . .

Files and file sizes . . . . . . . . . . . . . . . .
6.3.1 History file . . . . . . . . . . . . . . . .
6.3.2 Map file . . . . . . . . . . . . . . . . . .
6.3.3 Print file . . . . . . . . . . . . . . . . . .
6.3.4 Communication file . . . . . . . . . . . .
Command-line arguments . . . . . . . . . . . .
Frequently asked questions . . . . . . . . . . . .

7 Visualise results
7.1 Introduction . . . . . . . . . . . .
7.2 Working with GPP . . . . . . . . .
7.2.1 Overview . . . . . . . . .
7.2.2 Launching GPP . . . . .
7.3 Working with Delft3D-QUICKPLOT
7.4 GISVIEW interface . . . . . . . .

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8 Manage projects and files
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8.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175
8.1.1 Managing projects . . . . . . . . . . . . . . . . . . . . . . . . . . . 176
8.1.2 Managing files . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 176
9 Conceptual description
9.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.2 General background . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.2.1 Range of applications of Delft3D-FLOW . . . . . . . . . . . . .
9.2.2 Physical processes . . . . . . . . . . . . . . . . . . . . . . . .
9.2.3 Assumptions underlying Delft3D-FLOW . . . . . . . . . . . . .
9.3 Governing equations . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.3.1 Hydrodynamic equations . . . . . . . . . . . . . . . . . . . . .
9.3.2 Transport equation (for σ -grid) . . . . . . . . . . . . . . . . . .
9.3.3 Coupling between intake and outfall . . . . . . . . . . . . . . .
9.3.4 Equation of state . . . . . . . . . . . . . . . . . . . . . . . . .
9.4 Boundary conditions . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.4.1 Flow boundary conditions . . . . . . . . . . . . . . . . . . . .
9.4.1.1 Vertical boundary conditions . . . . . . . . . . . . .
9.4.1.2 Open boundary conditions . . . . . . . . . . . . . .
9.4.1.3 Shear-stresses at closed boundaries . . . . . . . . .
9.4.2 Transport boundary conditions . . . . . . . . . . . . . . . . . .
9.4.2.1 Open boundary conditions for the transport equation

9.4.2.2 Thatcher-Harleman boundary conditions . . . . . . .
9.4.2.3 Vertical boundary conditions transport equation . . .
9.5 Turbulence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

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Delft3D-FLOW, User Manual
9.5.1

Algebraic turbulence model (AEM) . . . . . . . . . . . . . . .
9.5.1.1 Algebraic closure model (ALG) . . . . . . . . . . .
9.5.1.2 Prandtl’s Mixing Length model (PML) . . . . . . . .
9.5.2 k -L turbulence model . . . . . . . . . . . . . . . . . . . . .
9.5.3 k -ε turbulence model . . . . . . . . . . . . . . . . . . . . . .
9.5.4 Low Reynolds effect . . . . . . . . . . . . . . . . . . . . . .
9.6 Secondary flow; sigma-model only . . . . . . . . . . . . . . . . . . .
9.7 Wave-current interaction . . . . . . . . . . . . . . . . . . . . . . . .
9.7.1 Forcing by radiation stress gradients . . . . . . . . . . . . .
9.7.2 Stokes drift and mass flux . . . . . . . . . . . . . . . . . . .
9.7.3 Streaming . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.7.4 Wave induced turbulence . . . . . . . . . . . . . . . . . . .
9.7.5 Enhancement of the bed shear-stress by waves . . . . . . .
9.8 Heat flux models . . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.8.1 Heat balance . . . . . . . . . . . . . . . . . . . . . . . . . .
9.8.2 Solar radiation . . . . . . . . . . . . . . . . . . . . . . . . .
9.8.3 Atmospheric radiation (long wave radiation) . . . . . . . . . .
9.8.4 Back radiation (long wave radiation) . . . . . . . . . . . . . .
9.8.5 Effective back radiation . . . . . . . . . . . . . . . . . . . . .
9.8.6 Evaporative heat flux . . . . . . . . . . . . . . . . . . . . . .
9.8.7 Convective heat flux . . . . . . . . . . . . . . . . . . . . . .
9.8.8 Overview of heat flux models . . . . . . . . . . . . . . . . .
9.9 Tide generating forces . . . . . . . . . . . . . . . . . . . . . . . . .

9.9.1 Tidal potential of Equilibrium tide . . . . . . . . . . . . . . .
9.9.2 Tidal potential of Earth tide . . . . . . . . . . . . . . . . . .
9.10 Hydraulic structures . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.10.1 3D gate . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.10.2 Quadratic friction . . . . . . . . . . . . . . . . . . . . . . . .
9.10.3 Linear friction . . . . . . . . . . . . . . . . . . . . . . . . . .
9.11 Flow resistance: bedforms and vegetation . . . . . . . . . . . . . . .
9.11.1 Bedform heights . . . . . . . . . . . . . . . . . . . . . . . .
9.11.1.1 Dune height predictor . . . . . . . . . . . . . . . .
9.11.1.2 Van Rijn (2007) bedform roughness height predictor
9.11.2 Trachytopes . . . . . . . . . . . . . . . . . . . . . . . . . . .
9.11.2.1 Trachytope classes . . . . . . . . . . . . . . . . .
9.11.2.2 Averaging and accumulation of trachytopes . . . .
9.11.3 (Rigid) 3D Vegetation model . . . . . . . . . . . . . . . . . .
10 Numerical aspects of Delft3D-FLOW
10.1 Staggered grid . . . . . . . . . . . . . . . . . . . .
10.2 sigma-grid and Z -grid . . . . . . . . . . . . . . . . .
10.3 Definition of model boundaries . . . . . . . . . . . .
10.4 Time integration of the 3D shallow water equations .
10.4.1 ADI time integration method . . . . . . . . .
10.4.2 Accuracy of wave propagation . . . . . . . .
10.4.3 Iterative procedure continuity equation . . .
10.4.4 Horizontal viscosity terms . . . . . . . . . .
10.4.5 Overview time step limitations . . . . . . . .
10.5 Spatial discretizations of 3D shallow water equations
10.5.1 Horizontal advection terms . . . . . . . . . .
10.5.2 Vertical advection term . . . . . . . . . . . .
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Contents
10.5.3 Viscosity terms . . . . . . . . . . . . . . .
10.6 Solution method for the transport equation . . . . .
10.6.1 Cyclic method . . . . . . . . . . . . . . .
10.6.2 Van Leer-2 scheme . . . . . . . . . . . .
10.6.3 Vertical advection . . . . . . . . . . . . .
10.6.4 Forester filter . . . . . . . . . . . . . . . .
10.7 Numerical implementation of the turbulence models
10.8 Drying and flooding . . . . . . . . . . . . . . . . .
10.8.1 Bottom depth at water level points . . . . .
10.8.2 Total water depth at velocity points . . . .
10.8.3 Drying and flooding criteria . . . . . . . .
10.9 Hydraulic structures . . . . . . . . . . . . . . . . .
10.9.1 3D Gate . . . . . . . . . . . . . . . . . .
10.9.2 Quadratic friction . . . . . . . . . . . . . .

10.9.2.1 Barrier . . . . . . . . . . . . . .
10.9.2.2 Bridge . . . . . . . . . . . . . .
10.9.2.3 Current Deflection Wall . . . . .
10.9.2.4 Weir . . . . . . . . . . . . . . .
10.9.2.5 Porous plate . . . . . . . . . . .
10.9.2.6 Culvert . . . . . . . . . . . . . .
10.9.3 Linear friction . . . . . . . . . . . . . . . .
10.9.4 Floating structure . . . . . . . . . . . . . .
10.10 Artificial vertical mixing due to σ co-ordinates . . .
10.11 Smoothing parameter boundary conditions . . . .
10.12 Assumptions and restrictions . . . . . . . . . . . .

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11 Sediment transport and morphology
11.1 General formulations . . . . . . . . . . . . . . . . . . . . . .
11.1.1 Introduction . . . . . . . . . . . . . . . . . . . . . . .
11.1.2 Suspended transport . . . . . . . . . . . . . . . . . .
11.1.3 Effect of sediment on fluid density . . . . . . . . . . .
11.1.4 Sediment settling velocity . . . . . . . . . . . . . . .
11.1.5 Dispersive transport . . . . . . . . . . . . . . . . . .
11.1.6 Three-dimensional wave effects . . . . . . . . . . . .
11.1.7 Initial and boundary conditions . . . . . . . . . . . . .
11.1.7.1 Initial condition . . . . . . . . . . . . . . .
11.1.7.2 Boundary conditions . . . . . . . . . . . .
11.2 Cohesive sediment . . . . . . . . . . . . . . . . . . . . . . .

11.2.1 Cohesive sediment settling velocity . . . . . . . . . .
11.2.2 Cohesive sediment dispersion . . . . . . . . . . . . .
11.2.3 Cohesive sediment erosion and deposition . . . . . .
11.2.4 Interaction of sediment fractions . . . . . . . . . . . .
11.2.5 Influence of waves on cohesive sediment transport . .
11.2.6 Inclusion of a fixed layer . . . . . . . . . . . . . . . .
11.2.7 Inflow boundary conditions cohesive sediment . . . .
11.3 Non-cohesive sediment . . . . . . . . . . . . . . . . . . . . .
11.3.1 Non-cohesive sediment settling velocity . . . . . . . .
11.3.2 Non-cohesive sediment dispersion . . . . . . . . . .
11.3.2.1 Using the algebraic or k -L turbulence model
11.3.2.2 Using the k -ε turbulence model . . . . . . .
11.3.3 Reference concentration . . . . . . . . . . . . . . . .
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11.4


11.5

11.6

11.7
11.8

11.3.4 Non-cohesive sediment erosion and deposition . . . . . . . . . . . .
11.3.5 Inclusion of a fixed layer . . . . . . . . . . . . . . . . . . . . . . . .
11.3.6 Inflow boundary conditions non-cohesive sediment . . . . . . . . . .
Bedload sediment transport of non-cohesive sediment . . . . . . . . . . . .
11.4.1 Basic formulation . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.4.2 Suspended sediment correction vector . . . . . . . . . . . . . . . .
11.4.3 Interaction of sediment fractions . . . . . . . . . . . . . . . . . . . .
11.4.4 Inclusion of a fixed layer . . . . . . . . . . . . . . . . . . . . . . . .
11.4.5 Calculation of bedload transport at open boundaries . . . . . . . . .
11.4.6 Bedload transport at U and V velocity points . . . . . . . . . . . . .
11.4.7 Adjustment of bedload transport for bed-slope effects . . . . . . . .
Transport formulations for non-cohesive sediment . . . . . . . . . . . . . . .
11.5.1 Van Rijn (1993) . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.2 Engelund-Hansen (1967) . . . . . . . . . . . . . . . . . . . . . . .
11.5.3 Meyer-Peter-Muller (1948) . . . . . . . . . . . . . . . . . . . . . . .
11.5.4 General formula . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.5 Bijker (1971) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.5.1 Basic formulation . . . . . . . . . . . . . . . . . . . . . .
11.5.5.2 Transport in wave propagation direction (Bailard-approach)
11.5.6 Van Rijn (1984) . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.7 Soulsby/Van Rijn . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.8 Soulsby . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

11.5.9 Ashida–Michiue (1974) . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.10 Wilcock–Crowe (2003) . . . . . . . . . . . . . . . . . . . . . . . . .
11.5.11 Gaeuman et al. (2009) laboratory calibration . . . . . . . . . . . . .
11.5.12 Gaeuman et al. (2009) Trinity River calibration . . . . . . . . . . . .
Morphological updating . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.6.1 Bathymetry updating including bedload transport . . . . . . . . . . .
11.6.2 Erosion of (temporarily) dry points . . . . . . . . . . . . . . . . . . .
11.6.3 Dredging and dumping . . . . . . . . . . . . . . . . . . . . . . . . .
11.6.4 Bed composition models and sediment availability . . . . . . . . . .
Specific implementation aspects . . . . . . . . . . . . . . . . . . . . . . . .
Validation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

12 Fixed layers in Z -model
12.1 Background . . . . . . . . . . . . . . . . . . . . . .
12.2 Time integration of the 3D shallow water equations .
12.2.1 ADI time integration method . . . . . . . . .
12.2.2 Linearisation of the continuity equation . . .
12.3 Bed stress term . . . . . . . . . . . . . . . . . . . .
12.4 Horizontal viscosity terms . . . . . . . . . . . . . . .
12.4.1 Overview time step limitations . . . . . . . .
12.5 Spatial discretisations of 3D shallow water equations
12.5.1 Horizontal advection terms . . . . . . . . . .
12.5.2 Vertical advection term . . . . . . . . . . . .
12.5.3 Viscosity terms . . . . . . . . . . . . . . . .
12.6 Solution method for the transport equation . . . . . .
12.6.1 Horizontal advection . . . . . . . . . . . . .
12.6.1.1 Van Leer-2 scheme . . . . . . . .
12.6.1.2 Implicit upwind scheme . . . . . .
12.6.2 Vertical advection . . . . . . . . . . . . . .
viii


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Contents
12.6.3 Forester filter . . . . . . . . . . . . . . . . . . . . . . . . .
12.7 Baroclinic pressure term . . . . . . . . . . . . . . . . . . . . . . .
12.8 Numerical implementation of the turbulence models . . . . . . . . .
12.9 Drying and flooding . . . . . . . . . . . . . . . . . . . . . . . . . .
12.9.1 Bottom depth at water level points . . . . . . . . . . . . . .
12.9.2 Bottom depth at velocity points . . . . . . . . . . . . . . .
12.9.3 Upwinding of the water level in defining the total water depth
12.9.4 Drying and flooding criteria . . . . . . . . . . . . . . . . .
12.10 Cut-cell and 45 degrees closed boundaries . . . . . . . . . . . . .
12.10.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . .
12.10.2 Cut Cells . . . . . . . . . . . . . . . . . . . . . . . . . . .
12.10.3 45 degrees closed boundary . . . . . . . . . . . . . . . . .
12.11 Hydraulic structures . . . . . . . . . . . . . . . . . . . . . . . . . .
12.11.1 3D Gate . . . . . . . . . . . . . . . . . . . . . . . . . . .
12.11.2 Quadratic friction . . . . . . . . . . . . . . . . . . . . . . .
12.11.3 Linear friction . . . . . . . . . . . . . . . . . . . . . . . . .
12.11.4 Floating structure . . . . . . . . . . . . . . . . . . . . . . .
12.12 Assumptions and restrictions . . . . . . . . . . . . . . . . . . . . .

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References

399

Glossary of terms

409

A Files of Delft3D-FLOW
A.1 MDF-file . . . . . . . . . . . . . . . . . . . . . . . .

A.1.1 Introduction . . . . . . . . . . . . . . . . . .
A.1.2 Example . . . . . . . . . . . . . . . . . . .
A.1.3 Physical parameters . . . . . . . . . . . . .
A.1.3.1 Tide Generating Forces . . . . . .
A.1.3.2 Thatcher-Harleman Conditions . .
A.1.4 Output options . . . . . . . . . . . . . . . .
A.1.4.1 Momentum terms output . . . . .
A.2 Attribute files . . . . . . . . . . . . . . . . . . . . .
A.2.1 Introduction . . . . . . . . . . . . . . . . . .
A.2.2 Orthogonal curvilinear grid . . . . . . . . . .
A.2.3 Computational grid enclosure . . . . . . . .
A.2.4 Bathymetry . . . . . . . . . . . . . . . . . .
A.2.5 Thin dams . . . . . . . . . . . . . . . . . .
A.2.6 Dry points . . . . . . . . . . . . . . . . . .
A.2.7 Time-series uniform wind . . . . . . . . . .
A.2.8 Space varying wind and pressure . . . . . .
A.2.8.1 Defined on the computational grid
A.2.8.2 Defined on an equidistant grid . .
A.2.8.3 Defined on a curvilinear grid . . .
A.2.8.4 Defined on a Spiderweb grid . . .
A.2.9 Initial conditions . . . . . . . . . . . . . . .
A.2.10 Open boundaries . . . . . . . . . . . . . . .
A.2.11 Astronomic flow boundary conditions . . . .
A.2.12 Astronomic correction factors . . . . . . . .
A.2.13 Harmonic flow boundary conditions . . . . .
A.2.14 QH-relation flow boundary conditions . . . .

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415

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419
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ix


Delft3D-FLOW, User Manual
A.2.15
A.2.16
A.2.17
A.2.18
A.2.19
A.2.20
A.2.21
A.2.22
A.2.23
A.2.24
A.2.25
A.2.26
A.2.27
A.2.28
A.2.29
A.2.30
A.2.31

Time-series flow boundary conditions . . . . . . .
Time-series correction of flow boundary conditions
Time-series transport boundary conditions . . . .
Time-series for the heat model parameters . . . .
Bottom roughness coefficients . . . . . . . . . . .
Horizontal eddy viscosity and diffusivity . . . . . .

Discharge locations . . . . . . . . . . . . . . . .
Flow rate and concentrations at discharges . . . .
Dredge and dump characteristics . . . . . . . . .
Dredge and nourishment time-series . . . . . . .
Polygon file . . . . . . . . . . . . . . . . . . . . .
Observation points . . . . . . . . . . . . . . . . .
Moving observation points . . . . . . . . . . . . .
Drogues . . . . . . . . . . . . . . . . . . . . . .
Cross-sections . . . . . . . . . . . . . . . . . . .
Fourier analysis . . . . . . . . . . . . . . . . . .
(Rigid) 3D vegetation model . . . . . . . . . . . .

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B Special features of Delft3D-FLOW
B.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.2 Decay rate constituents . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3 Hydraulic structures . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.1 3D gates . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.2 Quadratic friction . . . . . . . . . . . . . . . . . . . . . . . . . . .

B.3.2.1 Barrier . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.2.2 Real-time control . . . . . . . . . . . . . . . . . . . . .
B.3.2.3 Bridge . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.2.4 Current deflection wall (CDW) . . . . . . . . . . . . . .
B.3.2.5 Weirs (2D model) . . . . . . . . . . . . . . . . . . . . .
B.3.2.6 Local weir . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.3 Porous plate . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.4 Culvert . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.4.1 Definition of culvert in the discharge input file (<∗.src>) .
B.3.4.2 Properties for culverts defined in INI file (<name.cul>) .
B.3.4.3 Additional key-value pairs for culvert of type ‘c’ . . . . . .
B.3.4.4 Additional key-value pairs for culvert of type ‘d’ or ‘e’ . . .
B.3.4.5 Additional key-value pairs for culvert of type ‘f’ . . . . . .
B.3.4.6 Additional key-value pairs for culvert of type ‘u’ . . . . . .
B.3.4.7 More culverts . . . . . . . . . . . . . . . . . . . . . . .
B.3.5 Linear friction . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.5.1 Rigid sheet . . . . . . . . . . . . . . . . . . . . . . . .
B.3.6 Floating structure . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.3.7 Upwind at Discharges . . . . . . . . . . . . . . . . . . . . . . . .
B.3.8 User defined discharge through a structure . . . . . . . . . . . . .
B.4 Space varying Coriolis coefficients . . . . . . . . . . . . . . . . . . . . . .
B.5 Temperature modelling . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.5.1 Direct specification of net solar radiation . . . . . . . . . . . . . .
B.5.2 Specification of the coefficient of free convection . . . . . . . . . .
B.5.3 Output of computed heat fluxes . . . . . . . . . . . . . . . . . . .
B.6 Evaporation and precipitation . . . . . . . . . . . . . . . . . . . . . . . . .
B.7 Space varying wind and pressure . . . . . . . . . . . . . . . . . . . . . .
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Contents

B.8
B.9

B.10

B.11

B.12

B.13

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B.7.1 Space varying wind and pressure on an equidistant grid . . . . . . .
B.7.2 Space varying wind and pressure on a separate curvilinear grid . . .
B.7.3 Space varying wind and pressure on a Spiderweb grid . . . . . . . .
Horizontal large eddy simulation . . . . . . . . . . . . . . . . . . . . . . . .
Sediment transport and morphology . . . . . . . . . . . . . . . . . . . . . .
B.9.1 Sediment input file . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.9.2 Morphology input file . . . . . . . . . . . . . . . . . . . . . . . . . .
B.9.3 Sediment transport input file . . . . . . . . . . . . . . . . . . . . . .
B.9.4 User defined transport routine for sand or bedload fractions . . . . .
B.9.5 User defined transport routine for mud fractions . . . . . . . . . . . .
B.9.6 User defined routine for the settling velocity . . . . . . . . . . . . . .
B.9.7 Sediment transport and morphology boundary condition file . . . . .
B.9.8 Morphological factor file . . . . . . . . . . . . . . . . . . . . . . . .
B.9.9 Initial bed composition file . . . . . . . . . . . . . . . . . . . . . . .
Fluid mud (2-layer approach) . . . . . . . . . . . . . . . . . . . . . . . . . .
B.10.1 Two layer system . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.10.1.1 Suspension layer . . . . . . . . . . . . . . . . . . . . . .
B.10.1.2 Fluid mud layer . . . . . . . . . . . . . . . . . . . . . . .
B.10.1.3 Mathematical modelling of fluid mud layer . . . . . . . . .
B.10.2 Applying fluid mud . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.10.2.1 DelftIO library . . . . . . . . . . . . . . . . . . . . . . . .
B.10.2.2 Running a simulation in foreground . . . . . . . . . . . . .
B.10.2.3 Running a simulation in background . . . . . . . . . . . .
B.10.2.4 Pitt falls . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.10.3 Post-processing . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Z-model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.11.1 Grid definition and construction . . . . . . . . . . . . . . . . . . . .
B.11.2 Defining the keywords in the FLOW-GUI . . . . . . . . . . . . . . .
B.11.3 Restrictions and limitations . . . . . . . . . . . . . . . . . . . . . . .
B.11.3.1 Defining Cut-cells and 45 degrees closed boundaries . . .

B.11.4 45 degrees staircase closed boundary points (Z -model only) . . . .
B.11.5 Cut-cell closed boundary points (Z -model only) . . . . . . . . . . . .
Non-hydrostatic solver . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.12.1 The use of hydrostatic and non-hydrostatic models . . . . . . . . . .
B.12.2 Governing equations . . . . . . . . . . . . . . . . . . . . . . . . . .
B.12.3 A pressure correction technique for computing the non-hydrostatic
pressure . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.12.4 Boundary conditions . . . . . . . . . . . . . . . . . . . . . . . . . .
B.12.5 Conjugate gradient method (CG) . . . . . . . . . . . . . . . . . . .
B.12.6 Practical aspects of using the non-hydrostatic flow module . . . . . .
B.12.6.1 Switches in MDF-file . . . . . . . . . . . . . . . . . . . .
B.12.6.2 Grid spacing . . . . . . . . . . . . . . . . . . . . . . . . .
B.12.6.3 Vertical mixing . . . . . . . . . . . . . . . . . . . . . . . .
B.12.6.4 Convergence criterion CG solver . . . . . . . . . . . . . .
B.12.6.5 Defining the input (keywords) for the non-hydrostatic pressure approach . . . . . . . . . . . . . . . . . . . . . . . .
User defined functions . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.13.1 Boundary conditions for turbulence models . . . . . . . . . . . . . .
B.13.2 Diagnostic mode . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.13.3 Particle wind factor . . . . . . . . . . . . . . . . . . . . . . . . . . .

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Delft3D-FLOW, User Manual
B.14 Domain decomposition . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.14.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.14.2 Motivations for domain decomposition . . . . . . . . . . . . . . . . .
B.14.3 Local refinement horizontal and vertical . . . . . . . . . . . . . . . .
B.14.4 Pre-processing, processing and post-processing . . . . . . . . . . .
B.14.5 Restrictions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.14.6 How to set-up a domain decomposition model . . . . . . . . . . . .
B.15 Surfbeat/roller model . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.15.1 Domain . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.15.2 Formulations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.15.3 Boundary conditions . . . . . . . . . . . . . . . . . . . . . . . . . .
B.15.4 Coupling with other modules . . . . . . . . . . . . . . . . . . . . . .
B.15.5 Modes of operation . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.15.6 Input description . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.16 Bedform heights . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.17 Trachytopes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.17.1 Trachytope definition file . . . . . . . . . . . . . . . . . . . . . . . .

B.17.2 Area files . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.18 Creating D-Water Quality input files . . . . . . . . . . . . . . . . . . . . . .
B.19 Dry run . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.20 Reuse temporary files . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.21 Change the update frequency of the nodal factors . . . . . . . . . . . . . . .
B.22 Bubble screen . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.22.1 Entrained water as function of the air injection . . . . . . . . . . . .
B.22.1.1 Single nozzle bubble plume . . . . . . . . . . . . . . . . .
B.22.1.2 Bubble screen or line bubble plume . . . . . . . . . . . . .
B.22.1.3 Bubble plume in stagnant stratified water . . . . . . . . . .
B.22.2 Theory . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.22.3 Numerical implementation . . . . . . . . . . . . . . . . . . . . . . .
B.22.4 Input description . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.22.4.1 Generating a file with bubble screen locations . . . . . . .
B.22.4.2 Extending the discharge locations file with bubble screens
B.22.4.3 Extending the time-series file (<∗.dis>) with amount of entrained water . . . . . . . . . . . . . . . . . . . . . . . . .
B.22.5 Coupling with other models . . . . . . . . . . . . . . . . . . . . . .
B.22.6 Model results . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.23 1D–3D Coupling . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
B.23.1 Motivation for online Delft3D-SOBEK coupling . . . . . . . . . . . .
B.23.2 Implementation of Delft3D-SOBEK coupling . . . . . . . . . . . . .
B.23.3 Model setup and input (including best practise) . . . . . . . . . . . .
B.23.3.1 Preparation of the Delft3D-FLOW and SOBEK models . .
B.23.3.2 Setup of the communication file used by coupling . . . . .
B.23.3.3 Running of the coupled model system . . . . . . . . . . .
B.23.3.4 Best practice with regard to running coupled Delft3D-SOBEK
simulations . . . . . . . . . . . . . . . . . . . . . . . . .
B.23.4 Versions and limitations . . . . . . . . . . . . . . . . . . . . . . . .
B.24 Output of Courant number messages . . . . . . . . . . . . . . . . . . . . .
B.25 Initialisation of water depth in dry points . . . . . . . . . . . . . . . . . . . .

B.26 Remapping of near-bottom layers for accurate and smooth bottom shear stress
in Z -layers . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

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Contents
B.27 Slope Limiter . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

658


C Astronomical constituents
659
C.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 659
C.2 List of astronomical constituents . . . . . . . . . . . . . . . . . . . . . . . . 659
D Some modelling guidelines
D.1 Introduction . . . . . . . . . . . . . . . .
D.2 Depth-averaged or 3D model . . . . . . .
D.3 Selection of the vertical turbulence model
D.3.1 Well-mixed . . . . . . . . . . . .
D.3.2 Partly mixed . . . . . . . . . . .
D.3.3 Strongly stratified . . . . . . . . .

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E Computational grid
F Delft3D-NESTHD
F.1 Introduction . . . . . .
F.2 How to use NESTHD1

F.3 How to use NESTHD2
F.4 Example . . . . . . . .

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xiii


Delft3D-FLOW, User Manual

xiv

Deltares


List of Figures

List of Figures
2.1


System architecture of Delft3D . . . . . . . . . . . . . . . . . . . . . . . . .

3.1
3.2
3.3
3.4
3.5
3.6
3.7
3.8
3.9
3.10
3.11

Title window of Delft3D . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11
Main window Delft3D-MENU . . . . . . . . . . . . . . . . . . . . . . . . . .
12
Selection window for Hydrodynamics . . . . . . . . . . . . . . . . . . . . . .
13
Select working directory window . . . . . . . . . . . . . . . . . . . . . . .
13
Select working directory window to set the working directory to <flow\friesian_tidal_inlet> 14
The current working directory is not shown in the title bar due to its length . .
14
Main window of the FLOW Graphical User Interface . . . . . . . . . . . . . .
15
Menu bar of the FLOW-GUI . . . . . . . . . . . . . . . . . . . . . . . . . . .
15
File drop down menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

16
Data Group Domain selection and input fields . . . . . . . . . . . . . . . . .
16
Save changes window . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
17

4.1
4.2
4.3
4.4
4.5
4.6
4.7
4.8
4.9
4.10
4.11
4.12
4.13

Main window of the FLOW-GUI . . . . . . . . . . . . . . . . . . . . . . . . .
Visualisation Area Window . . . . . . . . . . . . . . . . . . . . . . . . . . .
Possible selections of View → Attributes . . . . . . . . . . . . . . . . . . . .
Display symbols of all grid related quantities . . . . . . . . . . . . . . . . . .
Data Group Description . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Staggered grid of Delft3D-FLOW . . . . . . . . . . . . . . . . . . . . . . .
Sub-data group Grid parameters . . . . . . . . . . . . . . . . . . . . . . . .
Definition sketch grid system to North orientation . . . . . . . . . . . . . . .
Specifying the layers thickness . . . . . . . . . . . . . . . . . . . . . . . . .
Sub-data group Domain → Bathymetry . . . . . . . . . . . . . . . . . . . .

Dry point at grid location (m, n) . . . . . . . . . . . . . . . . . . . . . . . .
Sub-data group Dry points . . . . . . . . . . . . . . . . . . . . . . . . . . .
Equivalence of v -type thin dams (left) and u-type thin dams (right) with the
same grid indices, (M−1 to M+1, N) . . . . . . . . . . . . . . . . . . . . . .
Sub-data group Thin dams . . . . . . . . . . . . . . . . . . . . . . . . . . .
Data Group Time frame . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Data Group Processes . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Sediment definition window . . . . . . . . . . . . . . . . . . . . . . . . . . .
Data group Initial conditions . . . . . . . . . . . . . . . . . . . . . . . . . .
Sketch of cross-section with 8 grid cells . . . . . . . . . . . . . . . . . . . .
Main window for defining open boundaries . . . . . . . . . . . . . . . . . . .
Open and save window for boundary locations and conditions . . . . . . . .
Straight channel; location of open and closed boundaries . . . . . . . . . . .
Specifying astronomical boundary conditions . . . . . . . . . . . . . . . . .
Contents of a Component set with two tidal constituents having corrections .
Specifying harmonic boundary conditions . . . . . . . . . . . . . . . . . . .
Specifying QH-relation boundary conditions . . . . . . . . . . . . . . . . . .
Specifying time-series boundary conditions . . . . . . . . . . . . . . . . . .
Transport conditions; Thatcher Harleman time lags . . . . . . . . . . . . . .
Specifying transport boundary conditions . . . . . . . . . . . . . . . . . . .
Specifying the physical constants . . . . . . . . . . . . . . . . . . . . . . .
Examples of the wind drag coefficient . . . . . . . . . . . . . . . . . . . . .
Sub-data group Roughness . . . . . . . . . . . . . . . . . . . . . . . . . .
Defining the eddy viscosity and eddy diffusivity . . . . . . . . . . . . . . . .
Window with HLES parameters . . . . . . . . . . . . . . . . . . . . . . . . .

4.14
4.15
4.16
4.17

4.18
4.19
4.20
4.21
4.22
4.23
4.24
4.25
4.26
4.27
4.28
4.29
4.30
4.31
4.32
4.33
4.34

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28
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31

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36
37
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43
45
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50
51
52
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57
58
60
61
62
63
65
67
68
71
72

xv



Delft3D-FLOW, User Manual
4.35
4.36
4.37
4.38
4.39
4.40
4.41
4.42
4.43
4.44
4.45
4.46
4.47
4.48
4.49
4.50
4.51
4.52
4.53
4.54
4.55
4.56
4.57
4.58
4.59

Sub-data group Heat flux model . . . . . . . . . . . . . . . . . . . . .
Sub-data group Sediment, overall and cohesive sediment parameters .
Sub-data group Sediment, cohesive sediment parameters (continued) .

Sub-data group Sediment, cohesive sediment parameters (continued) .
Sub-data group Sediment, non-cohesive sediment parameters . . . . .
Sub-data group Morphology . . . . . . . . . . . . . . . . . . . . . . .
Wind definition window . . . . . . . . . . . . . . . . . . . . . . . . . .
Nautical definition wind direction . . . . . . . . . . . . . . . . . . . . .
Sub-window Tidal forces . . . . . . . . . . . . . . . . . . . . . . . . .
Data Group Numerical parameters . . . . . . . . . . . . . . . . . . .
Data Group Discharges . . . . . . . . . . . . . . . . . . . . . . . . . .
Sub-window to define the discharge rate and substance concentrations
Decomposition of momentum released by a discharge station in (m, n)
Sub-data group Dredging and dumping . . . . . . . . . . . . . . . . .
Sub-window for Monitoring locations . . . . . . . . . . . . . . . . . . .
Sub-window for Observation points . . . . . . . . . . . . . . . . . . . .
Sub-data group Monitoring → Drogues . . . . . . . . . . . . . . . . .
Sub-data group Monitoring → Cross-Sections . . . . . . . . . . . . . .
Data Group Additional parameters . . . . . . . . . . . . . . . . . . . .
Sub-data group Output storage . . . . . . . . . . . . . . . . . . . . . .
Sub-data group Output → Storage → Edit WAQ input . . . . . . . . .
Sub-data group Output → Print . . . . . . . . . . . . . . . . . . . . .
Output Specifications window . . . . . . . . . . . . . . . . . . . . .
File drop down menu . . . . . . . . . . . . . . . . . . . . . . . . . . .
Save changes window . . . . . . . . . . . . . . . . . . . . . . . . . .

5.1
5.2
5.3
5.4
5.5
5.6
5.7

5.8
5.9
5.10
5.11
5.12

Starting window of the FLOW Graphical User Interface . . . . . . . . . . . . 117
Data Group Description sub-window . . . . . . . . . . . . . . . . . . . . . . 118
Sub-data group Grid . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 119
Sub-data group Grid; filenames, type of co-ordinate system and grid dimensions119
Visualisation Area window . . . . . . . . . . . . . . . . . . . . . . . . . . 120
Staggered grid used in Delft3D-FLOW . . . . . . . . . . . . . . . . . . . . . 121
Sub-data group Bathymetry . . . . . . . . . . . . . . . . . . . . . . . . . . 122
Location of a dry point at grid indices (m, n) . . . . . . . . . . . . . . . . . . 123
Sub-data group Dry Points . . . . . . . . . . . . . . . . . . . . . . . . . . . 123
Sets of thin dams blocking v -velocities (left) and blocking u-velocities (right) . 125
Sub-data group Thin dams . . . . . . . . . . . . . . . . . . . . . . . . . . . 126
Equivalence of v -type thin dams (left) and u-type thin dams (right) with the
same grid indices, (m − 1 to m + 1, n) . . . . . . . . . . . . . . . . . . . . 126
Window Time frame . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 127
Processes window . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 128
Processes: Pollutants and tracers sub-window . . . . . . . . . . . . . . . 129
Initial conditions sub-window . . . . . . . . . . . . . . . . . . . . . . . . . 130
Boundaries sub-window . . . . . . . . . . . . . . . . . . . . . . . . . . . . 131
Open/Save Boundaries sub-window . . . . . . . . . . . . . . . . . . . . . 133
Harmonic boundary conditions . . . . . . . . . . . . . . . . . . . . . . . . . 134
Boundaries: Transport Conditions window . . . . . . . . . . . . . . . . . 135
Physical parameters sub-data groups . . . . . . . . . . . . . . . . . . . . 136
Physical parameters - Constants sub-window . . . . . . . . . . . . . . . . 137
Roughness sub-window . . . . . . . . . . . . . . . . . . . . . . . . . . . . 138

Viscosity sub-window . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 139

5.13
5.14
5.15
5.16
5.17
5.18
5.19
5.20
5.21
5.22
5.23
5.24
xvi

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List of Figures
Wind sub-window . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Filled time table in the Wind sub-window . . . . . . . . . . . . . . . . . . . .
Numerical parameters sub-window . . . . . . . . . . . . . . . . . . . . . .
Data Group Operations; Discharges sub-window . . . . . . . . . . . . . .
Representation of a discharge in the Visualisation Area window . . . . . . .
Discharge Data sub-window . . . . . . . . . . . . . . . . . . . . . . . . . .
Observation points sub-window . . . . . . . . . . . . . . . . . . . . . . . .
Representation of an observation point in the Visualisation area window . .
Drogues sub-window . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Representation of a drogue in the Visualisation Area window . . . . . . . .
Cross-sections sub-window . . . . . . . . . . . . . . . . . . . . . . . . . .
Representation of a v-cross-section in the Visualisation Area window . . . .
Output sub-window . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Output details sub-window . . . . . . . . . . . . . . . . . . . . . . . . . .
Select scenario to be executed . . . . . . . . . . . . . . . . . . . . . . . . .
Part of the <tri-diag> report file . . . . . . . . . . . . . . . . . . . . . . . .
Computed time-series of the water level, current and salinity in observation
point Obs4 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
5.42 Computational grid with drogue Dr4, and contours of water level on 6 August
1990 01:00 hr . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
5.43 Vector velocities and contours of salinity on 6 August 1990 01:00 hr . . . . .

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140
141
142

143
143
145
145
146
147
147
148
149
150
152
153

6.1
6.2
6.3
6.4

MENU-window for Hydrodynamics . .
Select the MDF-file to be verified . . .
Part of the report to the output window
Select a report file for inspection . . .

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161
162
163

7.1
7.2
7.3
7.4
7.5

Hierarchy of GPP . . . . . . . . . . . . . . . . . . .
Main window of GPP . . . . . . . . . . . . . . . . .
Parameters and locations in the <trih-tut_fti.dat> file
Some options to change the plot attributes . . . . . .
Delft3D-QUICKPLOT interface to Delft3D result . . .

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173
174

9.1
9.2
9.3
9.4

9.13

Definition of water level (ζ ), depth (h) and total depth (H ). . . . . . . . . . . 187
Example of σ - and Z -grid . . . . . . . . . . . . . . . . . . . . . . . . . . . . 188
Examples wind drag coefficient depending on wind speed. . . . . . . . . . . 205
Hydrodynamic model of coastal area with three open boundaries with offshore
boundary (A–B at deep water) and two cross shore boundaries (A–A’, and B–B’)210
Illustration of memory effect for open boundary . . . . . . . . . . . . . . . . 214
Spiral motion in river bend (from Van Rijn (1990)) . . . . . . . . . . . . . . . 226
Vertical profile secondary flow (V ) in river bend and direction bed stress . . . 227
Vertical distribution of turbulent kinetic energy production . . . . . . . . . . . 236

Schematic view of non-linear interaction of wave and current bed shear-stresses
(from Soulsby et al. (1993b, Figure 16, p. 89)) . . . . . . . . . . . . . . . . . 238
Inter-comparison of eight models for prediction of mean and maximum bed
shear-stress due to waves and currents (from Soulsby et al. (1993b, Figure 17,
p. 90)) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 240
Overview of the heat exchange mechanisms at the surface . . . . . . . . . . 242
Co-ordinate system position Sun
δ : declination; θ: latitude; ωt: angular speed . . . . . . . . . . . . . . . . . . 246
Effect of tide generating force on the computed water elevation at Venice . . 256

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5.25
5.26
5.27
5.28
5.29
5.30
5.31
5.32
5.33
5.34
5.35
5.36
5.37
5.38
5.39
5.40

5.41

9.5
9.6
9.7
9.8
9.9
9.10

9.11
9.12

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9.14 Earth ocean tidal interaction (after Schwiderski (1980)) . . . . . . . . . . . .

258

10.1
10.2
10.3

10.4
10.5
10.6
10.7

276
276
276
278
279
282

Example of a grid in Delft3D-FLOW . . . . . . . . . . . . . . . . . . . . . .
Mapping of physical space to computational space . . . . . . . . . . . . . .
Grid staggering, 3D view (left) and top view (right) . . . . . . . . . . . . . . .
Example of Delft3D-FLOW model area . . . . . . . . . . . . . . . . . . . . .
Example of Delft3D-FLOW grid . . . . . . . . . . . . . . . . . . . . . . . . .
Numerical region of influence for one time step, “Zig-zag channel” . . . . . .
(a) Control Volume for mass for the Flooding scheme,
(b) Control Volume for momentum in horizontal and
(c) vertical direction for the Flooding scheme . . . . . . . . . . . . . . . . .
10.8 Layer numbering in σ -model . . . . . . . . . . . . . . . . . . . . . . . . . .
10.9 Illustration of wiggles in vertical direction . . . . . . . . . . . . . . . . . . . .
10.10 Definition bottom depth on FLOW grid . . . . . . . . . . . . . . . . . . . . .
10.11 Negative control volume with two positive flow-through heights, ▼❊❆◆-option .
10.12 Drying of a tidal flat; averaging approach. The flow-through height is based on
the average water level, see Equation 10.63, the velocity point is set dry. . . .
10.13 Overtopping of a river bank (weir); averaging approach. The flow-through
height is based on the average water level, see Equation 10.63, the velocity point is set dry. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
10.14 Drying of a tidal flat; upwind approach. The flow-through height is determined

by flow direction, see Equation 10.64, the velocity point remains wet. . . . . .
10.15 Overtopping of a river bank; upwind approach. The flow-through height is
based on the maximum water level, see Equation 10.64, the velocity point
remains wet. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
10.16 Special limiter for critical flow due to a sudden contraction (Flooding scheme
and increase in bottom larger than DGCUNI) . . . . . . . . . . . . . . . . .
10.17 Example of a 3D Gate (vertical cross-section) . . . . . . . . . . . . . . . . .
10.18 Computational layer partially blocked at bottom of gate . . . . . . . . . . . .
10.19 Example of a hydrostatic consistent and inconsistent grid;
∂H
(a) Hδσ > σ ∂H
∂x δx, (b) Hδσ < σ ∂x δx . . . . . . . . . . . . . . . . . . . .
10.20 Finite Volume for diffusive fluxes and pressure gradients . . . . . . . . . . .
10.21 Left and right approximation of a strict horizontal gradient . . . . . . . . . . .
10.22 Cold start with damping of eigen oscillations due to bottom friction . . . . . .
11.1
11.2
11.3
11.4

287
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295
297
298
300

300
301


301
302
306
306
316
317
317
320

Sediment mixing coefficient in non-breaking waves (Source: Van Rijn (1993))
Selection of the kmx layer; where a is Van Rijn’s reference height . . . . . .
Schematic arrangement of flux bottom boundary condition . . . . . . . . . .
Approximation of concentration and concentration gradient at bottom of kmx
layer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
11.5 Setting of bedload transport components at velocity points . . . . . . . . . .
11.6 Morphological control volume and bedload transport components . . . . . .

333
336
336

12.1 Irregular representation of bottom boundary layer in the Z -model . . . . . . .
12.2 Vertical computational grid Z -model (left) and σ -model (right) . . . . . . . .
12.3 discretisation along streamlines. Grid points in difference stencil dependent
on flow direction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
12.4 Aggregation of Control volumes in the vertical due to variation position free
surface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
12.5 Horizontal fluxes between neighbouring cells with variation in position free surface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

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344
369

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List of Figures
12.6 Definition bottom depth on Delft3D-FLOW grid . . . . . . . . . . . . . . . . .
12.7 The flow-through height is determined by the flow direction. The bottom is
represented as a staircase around the depth in water level points. . . . . . .
12.8 left: Cut Cell (definition) and right: defined by shifting (exaggerated) the corner
point to boundary. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
12.9 Flow along staircase boundary. . . . . . . . . . . . . . . . . . . . . . . . . .
12.10 Reflection of velocities . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
12.11 Example of a 3D Gate (vertical cross-section) . . . . . . . . . . . . . . . . .
12.12 Computational layer partially blocked at the bottom of the 3D gate . . . . . .
A.1
A.2
A.3
A.4
A.5

A.6
A.7
A.9
A.8

B.1
B.2
B.3
B.4
B.5
B.6
B.7

Example of computational grid enclosures . . . . . . . . . . . . . . . . . . .
Example of thin dams in a model area . . . . . . . . . . . . . . . . . . . . .
Dry points in model area . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Definition sketch of wind direction according to Nautical convention . . . . .
Definition wind components for space varying wind . . . . . . . . . . . . . .
Cross-sections in model area . . . . . . . . . . . . . . . . . . . . . . . . . .
Example of the plant input file (<name.pla>) where the areas are defined with
a polygon file, see section A.2.25 . . . . . . . . . . . . . . . . . . . . . . . .
Example of the plant input file (<name.pla>) where two different vegetation
types are defined. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Example of the plant input file (<name.pla>) where the area is defined with
files according the depth-format, see section A.2.4 . . . . . . . . . . . . . .

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392
394
395

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396
396
429
431
432
433
436
482
486
487
487

B.20
B.21
B.22
B.23

Example of 3D gates in perspective view (left) and top view (right) . . . . . . 493
Barriers in model area . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 494
Example of CDW in perspective view (left) and top view (right) . . . . . . . . 496
Top view of 2D weirs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 498
Local weir . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 500
Top view of rigid sheets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 508
Cross-sectional view floating structure The vertical lines are drawn through the
velocity points . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 510
Illustration of the data to grid conversion for meteo input on a separate curvilinear grid . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 534
Wind definition according to Nautical convention . . . . . . . . . . . . . . . . 536
Spiderweb grid definition . . . . . . . . . . . . . . . . . . . . . . . . . . . . 537
Definition of truncation wave numbers due to resolution and numerical damping 542

Schematic representation of the governing processes between suspension
layer and fluid mud layer Winterwerp et al. (1999). . . . . . . . . . . . . . . . 584
A schematic representation of two Delft3D-FLOW modules running simultaneously simulating a fluid mud problem . . . . . . . . . . . . . . . . . . . . . . 587
Vertical grid construction, Z -model . . . . . . . . . . . . . . . . . . . . . . . 592
Inserting appropriate keywords to switch on the Z -grid-model . . . . . . . . 592
Defining cut-cell and 45 degree closed boundaries . . . . . . . . . . . . . . 593
45 degrees staircase closed boundary . . . . . . . . . . . . . . . . . . . . . 594
Cut-cell closed boundary (not related to the data specified in the example above)596
Schematic representation of the free surface boundary condition for the pressure correction. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 601
Area where a non-hydrostatic pressure is taken into account . . . . . . . . . 603
Defining the Non-hydrostatic solver using the Z -model in the FLOW-GUI . . . 606
Example of grid refinement . . . . . . . . . . . . . . . . . . . . . . . . . . . 611
Example of coupling of models with a different dimension . . . . . . . . . . . 611

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B.9
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B.11
B.12
B.13
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B.15
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Delft3D-FLOW, User Manual
B.24
B.25
B.26
B.27
B.28
B.29

B.30

B.31

B.32

B.33

B.34
B.35
B.36
B.37

xx

Schematised island without domain decomposition . . . . . . . . . . . . . . 612
Schematised island with domain decomposition . . . . . . . . . . . . . . . . 613
Example of grid refinement in the horizontal direction . . . . . . . . . . . . . 614
Problem layout sketch . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 620
Schematic axisymmetric bubble plume with entrainment of water by the rising

bubbles . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 637
Definition of near-, mid- and far-field of the circulation induced by a bubble
screen and the vertical profile of the vertical (downward) velocity in the midfield circulation cell . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 638
Flux of entrained water as function or air flow under atmospheric conditions
and height above the nozzle in stagnant non-stratified water based on experiments in (Milgram, 1983) The injected air flux is given in [Nm3 /s] where N
stands for normal atmospheric conditions. . . . . . . . . . . . . . . . . 639
Schematic overview of the introduction of cold hypolimnion water into the lower
part of the warmer epilimnion by a bubble plume. Above the first plunge point
the second plunge point creates an intrusion and recirculation inside the epilimnion. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 641
The mid field averaged heat equation with vertical distribution of sources/sinks
and vertical (downward) velocity profile and the model equation applied to a
single grid box. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 646
Initial temperature profile (blue) and after application of a bubble screen at
z = −16 m (red line). On horizontal axis the temperature (in ◦ C) and on the
vertical axis the vertical position in the water column (in m). . . . . . . . . . . 648
Explicit exchange of water levels and discharges between Delft3D-FLOW and
SOBEK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 650
Coupling of the Delft3D-FLOW and SOBEK grids. . . . . . . . . . . . . . . . 650
Enable Delft3D-FLOW in SOBEK settings and select MDF-file and communicationfile. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 653
Remapping of two near-bed layers to an equidistant layering. Figure from
Platzek et al. (2012). . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 657

D.1

Steps to determine if a 3D model is required . . . . . . . . . . . . . . . . . .

E.1
E.2
E.3
E.4

E.5

Left: items with the same (array) number. Right: a computational control volume670
Lower-left (left) and lower right (right) computational grid cell . . . . . . . . . 670
Definition sketch of a (12 ∗ 7) staggered grid with grid enclosure (thick line)
and numerical grid . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 671
Location and combination of water level and velocity controlled open boundaries672
Straight channel with 10 ∗ 5 computational grid cells . . . . . . . . . . . . . 674

F.1
F.2
F.3
F.4
F.5

Hydrodynamics selection window with the Tools option . . . . . .
Additional tools window with the NESTHD1 and NESTHD2 options
Specification of input and output files for NESTHD1 . . . . . . . . .
Specification of input and output files for NESTHD2 . . . . . . . . .
Overview grids overall and nested models . . . . . . . . . . . . . .

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List of Tables

List of Tables
4.1
4.2
4.3

Overview of the main attribute files . . . . . . . . . . . . . . . . . . . . . . .
Time step limitations shallow water solver Delft3D-FLOW . . . . . . . . . .
Definition of open and closed boundaries. . . . . . . . . . . . . . . . . . . .

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5.1

Overview of attribute files.

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116

6.1

Simulation performance on different operating systems . . . . . . . . . . . .

164


9.2
9.3
9.4

Overview of eddy viscosity options in Delft3D-FLOW . . . . . . . . . . . . . 193
Overview of eddy diffusivity options in Delft3D-FLOW . . . . . . . . . . . . 197
Frequencies, phases and amplitude on alongshore waterlevel boundary and
corresponding frequenties, phases and amplitudes for the cross-shore Neumann boundaries . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 211
9.5 Fitting coefficients for wave/current boundary layer model . . . . . . . . . . . 239
9.6 Albedo coefficient and cloud function . . . . . . . . . . . . . . . . . . . . . . 247
9.7 Terms of the heat balance used in heat model 1 . . . . . . . . . . . . . . . . 253
9.8 Terms of the heat balance used in heat model 2 . . . . . . . . . . . . . . . . 253
9.9 Terms of the heat balance used in heat model 4 . . . . . . . . . . . . . . . . 254
9.10 Terms of the heat balance used in heat model 5 . . . . . . . . . . . . . . . . 254
9.11 Summary of time dependent input data of the heat flux models . . . . . . . . 255
9.12 Constants of major tidal modes . . . . . . . . . . . . . . . . . . . . . . . . . 257
10.1 Time step limitations shallow water solver Delft3D-FLOW

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284

11.1 Additional transport relations . . . . . . . . . . . . . . . . . . . . . . . . . . 347
11.2 Overview of the coefficients used in the various regression models (Soulsby
et al., 1993a) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 362
11.3 Overview of the coefficients used in the various regression models, continued
(Soulsby et al., 1993a) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 362
12.1 Available advection and diffusion schemes in the Z -layer model (for comparison also the options available in the σ -model have been included). . . . . . . 378
12.2 Time step limitations shallow water solver Delft3D-FLOW . . . . . . . . . . 381

A.2
A.3
A.3
A.4
A.5
A.5
A.6
A.7
A.8

Print flags for map-data . . . . . . . . . . . . . .
Print flags for history-data . . . . . . . . . . . .
Print flags for history-data . . . . . . . . . . . .
Storage flags for map-data . . . . . . . . . . . .
Storage flags for history-data . . . . . . . . . . .
Storage flags for history-data . . . . . . . . . . .
Optional output flags under Additional parameters
Dredge and dump input file with keywords . . . .
Vegetation input file with keywords . . . . . . . .

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Special features of Delft3D-FLOW . . . . . .
Special features of Delft3D-FLOW . . . . . .
Default parameter settings for the SGS model
Sediment input file with keywords . . . . . .
Options for sediment diameter characteristics
Sediment input file without keywords . . . . .
Morphological input file with keywords . . . .

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Morphological input file without keywords . . . . .

Morphological input file without keywords . . . . .
Additional transport relations . . . . . . . . . . . .
Transport formula parameters . . . . . . . . . . .
Sediment transport formula input file with keywords
Initial bed composition file keywords . . . . . . . .
Example of vertical grid refinement . . . . . . . . .
Example of a <name.ddb> file . . . . . . . . . . .
Bedform keywords in mdf file . . . . . . . . . . . .

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1 A guide to this manual
1.1

Introduction
This User Manual concerns the hydrodynamic module, Delft3D-FLOW, of the Delft3D software
suite. To make this manual more accessible we will briefly describe the contents of each
chapter and appendix.
If this is your first time to start working with Delft3D-FLOW we suggest you to read and practice
the getting started of chapter 3 and the tutorial of chapter 5. These chapters explain the user
interface options and guide you through the definition of your first simulation.
chapter 2: Introduction to Delft3D-FLOW, provides specifications of Delft3D-FLOW, such
as the areas of applications, the standard and specific features provided, the required computer configuration and how to install the software.

chapter 3: Getting started, explains the use of the overall menu program, which gives access
to all Delft3D modules and to the pre- and post-processing tools. Last but not least you will
get a first introduction into the FLOW Graphical User Interface (GUI), used to define the input
required for a flow simulation.
chapter 4: Graphical User Interface, provides practical information on the selection of all
parameters and the tuning of the model.
chapter 5: Tutorial, emphasis at giving you some first hands-on experience in using the
FLOW-GUI to define the input of a simple problem, in verifying this input, in executing the
simulation and in inspecting the results.
chapter 6: Execute a scenario, discusses how to verify and execute a scenario and provides
information on run times and file sizes.
chapter 7: Visualise results, explains in short the visualisation of results. It introduces the
post processing program GPP to visualise or animate the simulation results.
chapter 8: Manage projects and files, provides a detailed insight into the managing of
projects and scenarios.
chapter 9: Conceptual description, describes the theoretical physics modelled in Delft3DFLOW.
chapter 10: Numerical aspects of Delft3D-FLOW, discusses the various grids, grid-numbering
etc., as well as all practical matters about the implications of parameter selections.
chapter 11: Sediment transport and morphology, describes the three-dimensional transport of suspended sediment, bedload transport and morphological updating of the bottom.
chapter 12: Fixed layers in Z -model, the concept of fixed, horizontal layers in the vertical
grid are given.
References, provides a list of publications and related material on the Delft3D-FLOW module.

Deltares

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